Germany Job Openings
Universitätsklinikum Frankfurt
PhD – Machine Learning
Frankfurt am Main
FULL TIME & PART TIME
August 28, 2024
(We are targeting applicants of all genders)
Full time (100% E13) | limited to 3 years with possibility of extension | Announcement number: 686-2024
The Edinger Institute is a German research institution and neuropathological diagnostic section at the University Hospital Frankfurt am Main. We are part of an excellent scientific community in Frankfurt including the Mildred Scheel Career Center (MSNZ), the Univeristy Cancer Center (UCT Frankfurt-Marburg), the German Consortium for Translational Cancer Research (DKTK) and the Frankfurt Cancer Institute (FCI). The Biobank and Immunomonitoring-Platform of the FCI is located at the Edinger Institute and offer optimal conditions for tissue-based research. The AG Molecular and Computational Neuropathology uses machine and deep learning as well as genome-wide molecular analysis methods in tumor specimens and liquid biopsies to develop new diagnostic tools and to establish novel prognostic and predictive biomarkers for neurooncological patients.
About the project
We are recruting a Ph D student for a DFG-funded research project focused on the automated detection and classification of tumor cells in cerebrospinal fluid samples by deep learning models. The aim is to develop a fully digital workflow and clinical-grade deep learning tool to tranform the current practice in neuropathological institutes of manual cell differentiation and counting of cerebrospinal fluid samples using a microscope. The thesis will build on a previously published algorithm (PMID: 36519297; https://github.com/pseegerer/csf_cell_classification) and use a new, multicentric, well-annotated cancer cell dataset to improve automated cell segmentation, cancer cell detection and tumor origin prediction. The doctoral position is in cooperation with the Machine Learning Group of the TU Berlin.
Your role
Join our teamUse the time until September 30, 2024 to apply. Please submit your online application including a possible starting date and your salary expectations. For further information regarding the position and project, please contact PD Dr. Leonille Schweizer via 069 / 6301 84169 or via leonille.schweizer@med.uni-frankfurt.de.
Full time (100% E13) | limited to 3 years with possibility of extension | Announcement number: 686-2024
The Edinger Institute is a German research institution and neuropathological diagnostic section at the University Hospital Frankfurt am Main. We are part of an excellent scientific community in Frankfurt including the Mildred Scheel Career Center (MSNZ), the Univeristy Cancer Center (UCT Frankfurt-Marburg), the German Consortium for Translational Cancer Research (DKTK) and the Frankfurt Cancer Institute (FCI). The Biobank and Immunomonitoring-Platform of the FCI is located at the Edinger Institute and offer optimal conditions for tissue-based research. The AG Molecular and Computational Neuropathology uses machine and deep learning as well as genome-wide molecular analysis methods in tumor specimens and liquid biopsies to develop new diagnostic tools and to establish novel prognostic and predictive biomarkers for neurooncological patients.
About the project
We are recruting a Ph D student for a DFG-funded research project focused on the automated detection and classification of tumor cells in cerebrospinal fluid samples by deep learning models. The aim is to develop a fully digital workflow and clinical-grade deep learning tool to tranform the current practice in neuropathological institutes of manual cell differentiation and counting of cerebrospinal fluid samples using a microscope. The thesis will build on a previously published algorithm (PMID: 36519297; https://github.com/pseegerer/csf_cell_classification) and use a new, multicentric, well-annotated cancer cell dataset to improve automated cell segmentation, cancer cell detection and tumor origin prediction. The doctoral position is in cooperation with the Machine Learning Group of the TU Berlin.
Your role
- Data preparation and training of convolutional neural networks to improve cancer cell detection and origin prediction
- Comparison and selection of cell segmentation algorithms and optimization for cerebrospinal fluid samples
- Development of interactive visualization and reporting tools for diagnostics and collaborative research projects
- Implementation of explainable AI methods and confidence scores to increase the interpretability of classification results for diagnostic use
- Establishment of a diagnostic workflow for deep learning-based cerebrospinal fluid cell analysis for a clinical evaluation period (12 months) in parallel to routine diagnostics
- Publication of the results in scientific journals
- Presentation and discussion of the research results at conferences in Germany and abroad
- You have successfully completed a Master’s degree in a related field such as bioinfromatics, computer science or physics and are pursuing a publication-based doctorate.
- Proven programming experience in languages such as Python, R, or C++, frameworks such as Py Torch, Tensor Flow, or Num Py, and version control systems like Git
- Excellent communication skills and ability to collaborate
- Proficiency in English, good knowledge of German (min. B2)
- Due to legal regulations, valid proof of measles immunity / measles vaccination is required
- Work environment: Working in an interdisciplinary, young research team.
- Collective agreement: In addition to an attractive salary based on a collective agreement (100% E13) with an annual special payment and 40-hour-week, you have 30 days holiday and benefit from long-term security through company pension schemes
- Collective agreement: In addition to an attractive salary based on a collective agreement with an annual special payment, you benefit from long-term security through company pension schemes
- Mobility: Free public transport in all Hessen (Free State Ticket Hessen)
- Campus: Our attractive university hospital campus offers a modern cafeteria, various cafes, and opportunities to rest in numerous green spaces. A walk on the riverside of the Main offers relaxation during breaks
- Work-Life-Balance: Part-time employment is possible, we offer childcare in our daycare center (if you have any questions, please contact UKF-Familienservice), child care during holidays
- Health Promotion: Benefit from our attractive health offers. We offer regular online and face-to-face courses on nutrition, relaxation, sports and exercise.
- Professional development: Internal and external training for your professional development
- Any questions? Many answers can be found in our FAQs for new employees. If you have any further questions, please do not hesitate to contact us.
Join our teamUse the time until September 30, 2024 to apply. Please submit your online application including a possible starting date and your salary expectations. For further information regarding the position and project, please contact PD Dr. Leonille Schweizer via 069 / 6301 84169 or via leonille.schweizer@med.uni-frankfurt.de.
New Job Alerts
Pwc Germany
Rechtsreferendar Legal (w/m/d)
Frankfurt am Main
FULL TIME & PART TIME
November 19, 2024
View Job Description
Pwc Germany
Praktikum / Werkstudent Legal (w/m/d)
Berlin
FULL TIME & PART TIME
November 19, 2024
View Job Description
implantcast
Ingenieur:in / Meister:in / Techniker:in als Teamleiter:in Finish Medizintechnik
Buxtehude
November 19, 2024
View Job Description
Pava Partners Germany AG
Vice President/Director M&A (m/w/d)
Leipzig
FULL TIME
November 19, 2024
View Job Description
Löwenstein Medical SE & Co. KG
Leiter entwicklungsbegleitendes Qualitätsmanagement für Medizinprodukte (m/w/d)
Hamburg
November 19, 2024
View Job DescriptionLooking for similar job?
SAP
(Junior) Project Developer Machine Learning (f/m/d)
Berlin
FULL TIME & PART TIME
August 29, 2024
View Job Description
Production Technology
BT/MT: »Deep learning and machine learning in production«
Aachen
August 28, 2024
View Job Description
See What’s New: Universitätsklinikum Frankfurt Job Opportunities
Universitätsklinikum Frankfurt
PhD - Forensic Entomology MSCA Doctoral Network NATURAL TRACES
Frankfurt am Main
FULL TIME & PART TIME
September 2, 2024
View Job DescriptionNew Job Alerts
Pwc Germany
Rechtsreferendar Legal (w/m/d)
Frankfurt am Main
FULL TIME & PART TIME
November 19, 2024
View Job Description
Pwc Germany
Praktikum / Werkstudent Legal (w/m/d)
Berlin
FULL TIME & PART TIME
November 19, 2024
View Job Description
implantcast
Ingenieur:in / Meister:in / Techniker:in als Teamleiter:in Finish Medizintechnik
Buxtehude
November 19, 2024
View Job Description
Pava Partners Germany AG
Vice President/Director M&A (m/w/d)
Leipzig
FULL TIME
November 19, 2024
View Job Description
Löwenstein Medical SE & Co. KG
Leiter entwicklungsbegleitendes Qualitätsmanagement für Medizinprodukte (m/w/d)
Hamburg
November 19, 2024
View Job Description